Jingping, Yunnan, China, is an unfriendly area for ground survey due to the high altitude, rough terrain and dense vegetation. To detect the concealed magnetite ore bodies in this area, the aeromagnetic survey in a 7.8 km² region was carried out. The field experiments were conducted to investigate the source and level of the noise. Then, the proton magnetometer was placed 3 m under the multirotor unmanned aerial vehicle (UAV) to decrease the static interference. The inverse distance weighting interpolation algorithm with a nonlinear filter was proposed to suppress the noise and dynamic interference caused by the strong wind. The results show that these methods can alleviate the interference of the UAV rotor and strong wind effectively. The patterns of the data from our aeromagnetic survey agree well with the horizontal distribution of the magnetic strata deduced from the geological background. Furthermore, the concealed mafic magmatic rocks and the titanium magnetite inferred from the aeromagnetic survey are confirmed by 4 drill logs in the study area, which supports the validity of the UAV aeromagnetic survey.